All modules for which code is available

• ampal.align
• ampal.amino_acids
• ampal.ampal_warnings
• ampal.analyse_protein
• ampal.assembly
• ampal.base_ampal
• ampal.dssp
• ampal.geometry
• ampal.interactions
• ampal.ligands
• ampal.nucleic_acid
• ampal.pdb_parser
• ampal.protein
• ampal.pseudo_atoms